Genetics DOI: 10.1534/genetics.111.132449

WB Paper ID : WBPaper00040002

Title : Cell Architecture: Surrounding Muscle Cells Shape Gland Cell Morphology in the Caenorhabditis elegans Pharynx

Authors : Wahyu Hendrati Raharjo,, Vikas Ghai,, Aidan Dineen,, Michael Bastiani,, Jeb Gaudet

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Entity class Entity name link link status Relevant content from URL # of linked occurrences
Anatomy amphid neurons http://www.wormbase.org/db/get?name=amphid%20neuron;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: amphid neuron ' 1
Anatomy basement membrane http://www.wormbase.org/db/get?name=basement%20membrane;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: basal lamina ' 1
Anatomy body wall muscles http://www.wormbase.org/db/get?name=body%20wall%20muscle;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: body wall muscle cell ' 1
Anatomy buccal cavity http://www.wormbase.org/db/get?name=buccal%20cavity;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: buccal cavity ' 1
Anatomy ECM http://www.wormbase.org/db/get?name=ECM;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: basal lamina ' 3
Anatomy epithelial cells http://www.wormbase.org/db/get?name=epithelial%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: epithelial cell ' 4
Anatomy excretory canal cell http://www.wormbase.org/db/get?name=excretory%20canal%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: excretory cell ' 1
Anatomy extracellular matrix http://www.wormbase.org/db/get?name=extracellular%20matrix;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: basal lamina ' 1
Anatomy g1P http://www.wormbase.org/db/get?name=g1P;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: g1P ' 15
Anatomy gland cell http://www.wormbase.org/db/get?name=gland%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: gland cell ' 8
Anatomy gland cells http://www.wormbase.org/db/get?name=gland%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: gland cell ' 5
Anatomy I3 http://www.wormbase.org/db/get?name=I3;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: I3 ' 3
Anatomy intestine http://www.wormbase.org/db/get?name=intestine;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: intestine ' 2
Anatomy isthmus http://www.wormbase.org/db/get?name=isthmus;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: isthmus ' 1
Anatomy marginal cell http://www.wormbase.org/db/get?name=marginal%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: marginal cell ' 1
Anatomy marginal cells http://www.wormbase.org/db/get?name=marginal%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: marginal cell ' 1
Anatomy mc3 http://www.wormbase.org/db/get?name=mc3;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: mc3 ' 1
Anatomy pharyngeal cells http://www.wormbase.org/db/get?name=pharyngeal%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharyngeal cell ' 2
Anatomy pharyngeal lumen http://www.wormbase.org/db/get?name=pharyngeal%20lumen;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharyngeal lumen ' 11
Anatomy pharyngeal muscle cells http://www.wormbase.org/db/get?name=pharyngeal%20muscle%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharyngeal muscle cell ' 2
Anatomy pharyngeal neuron http://www.wormbase.org/db/get?name=pharyngeal%20neuron;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharyngeal neuron ' 1
Anatomy pharyngeal neurons http://www.wormbase.org/db/get?name=pharyngeal%20neuron;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharyngeal neuron ' 1
Anatomy pharynx http://www.wormbase.org/db/get?name=pharynx;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pharynx ' 41
Anatomy pm2 http://www.wormbase.org/db/get?name=pm2;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pm2 ' 1
Anatomy pm3 http://www.wormbase.org/db/get?name=pm3;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pm3 ' 1
Anatomy pm4 http://www.wormbase.org/db/get?name=pm4;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pm4 ' 3
Anatomy pm5 http://www.wormbase.org/db/get?name=pm5;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pm5 ' 3
Anatomy pm8 http://www.wormbase.org/db/get?name=pm8;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: pm8 ' 4
Anatomy seam cells http://www.wormbase.org/db/get?name=seam%20cell;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: seam cell ' 1
Anatomy vpi1 http://www.wormbase.org/db/get?name=vpi1;class=Anatomy_namelive Title: 'Summary for Anatomy Ontology Term: vpi1 ' 2
Clone pPD95.77 http://www.wormbase.org/db/get?name=pPD95.77;class=Clonelive Title: 'Clone Report for: pPD95.77' 1
Gene/Protein 4 http://www.wormbase.org/db/get?name=tnt-4;class=Genelive Title: 'Gene Summary for tnt-4' 1
Gene/Protein AJM-1 http://www.wormbase.org/db/get?name=AJM-1;class=Genelive Title: 'Gene Summary for ajm-1' 1
Gene/Protein ceh-2 http://www.wormbase.org/db/get?name=ceh-2;class=Genelive Title: 'Gene Summary for ceh-2' 3
Gene/Protein DLG-1 http://www.wormbase.org/db/get?name=DLG-1;class=Genelive Title: 'Gene Summary for dlg-1' 1
Gene/Protein dlg-1 http://www.wormbase.org/db/get?name=dlg-1;class=Genelive Title: 'Gene Summary for dlg-1' 2
Gene/Protein dpy-13 http://www.wormbase.org/db/get?name=dpy-13;class=Genelive Title: 'Gene Summary for dpy-13' 2
Gene/Protein dpy-5 http://www.wormbase.org/db/get?name=dpy-5;class=Genelive Title: 'Gene Summary for dpy-5' 2
Gene/Protein egl-1 http://www.wormbase.org/db/get?name=egl-1;class=Genelive Title: 'Gene Summary for egl-1' 1
Gene/Protein elt-2 http://www.wormbase.org/db/get?name=elt-2;class=Genelive Title: 'Gene Summary for elt-2' 3
Gene/Protein HLH-6 http://www.wormbase.org/db/get?name=HLH-6;class=Genelive Title: 'Gene Summary for hlh-6' 1
Gene/Protein hlh-6 http://www.wormbase.org/db/get?name=hlh-6;class=Genelive Title: 'Gene Summary for hlh-6' 6
Gene/Protein let-381 http://www.wormbase.org/db/get?name=let-381;class=Genelive Title: 'Gene Summary for let-381' 2
Gene/Protein let-502 http://www.wormbase.org/db/get?name=let-502;class=Genelive Title: 'Gene Summary for let-502' 6
Gene/Protein let-60 http://www.wormbase.org/db/get?name=let-60;class=Genelive Title: 'Gene Summary for let-60' 2
Gene/Protein nhr-23 http://www.wormbase.org/db/get?name=nhr-23;class=Genelive Title: 'Gene Summary for nhr-23' 1
Gene/Protein pha-2 http://www.wormbase.org/db/get?name=pha-2;class=Genelive Title: 'Gene Summary for pha-2' 9
Gene/Protein pha-2(ad472 http://www.wormbase.org/db/get?name=pha-2;class=Genelive Title: 'Gene Summary for pha-2' 1
Gene/Protein phat-1 http://www.wormbase.org/db/get?name=phat-1;class=Genelive Title: 'Gene Summary for phat-1' 2
Gene/Protein pyr-1 http://www.wormbase.org/db/get?name=pyr-1;class=Genelive Title: 'Gene Summary for pyr-1' 3
Gene/Protein rol-6 http://www.wormbase.org/db/get?name=rol-6;class=Genelive Title: 'Gene Summary for rol-6' 3
Gene/Protein SMA-1 http://www.wormbase.org/db/get?name=SMA-1;class=Genelive Title: 'Gene Summary for sma-1' 4
Gene/Protein sma-1 http://www.wormbase.org/db/get?name=sma-1;class=Genelive Title: 'Gene Summary for sma-1' 48
Gene/Protein sma-2 http://www.wormbase.org/db/get?name=sma-2;class=Genelive Title: 'Gene Summary for sma-2' 6
Gene/Protein sma-3 http://www.wormbase.org/db/get?name=sma-3;class=Genelive Title: 'Gene Summary for sma-3' 6
Gene/Protein tnt-1 http://www.wormbase.org/db/get?name=tnt-1;class=Genelive Title: 'Gene Summary for mup-2' 1
Gene/Protein tnt-3 http://www.wormbase.org/db/get?name=tnt-3;class=Genelive Title: 'Gene Summary for tnt-3' 3
Gene/Protein TNT-4 http://www.wormbase.org/db/get?name=TNT-4;class=Genelive Title: 'Gene Summary for tnt-4' 1
Gene/Protein tnt-4 http://www.wormbase.org/db/get?name=tnt-4;class=Genelive Title: 'Gene Summary for tnt-4' 8
Gene/Protein unc-4 http://www.wormbase.org/db/get?name=unc-4;class=Genelive Title: 'Gene Summary for unc-4' 1
Gene/Protein unc-52 http://www.wormbase.org/db/get?name=unc-52;class=Genelive Title: 'Gene Summary for unc-52' 3
Gene/Protein UNC-89 http://www.wormbase.org/db/get?name=UNC-89;class=Genelive Title: 'Gene Summary for unc-89' 1
Gene/Protein unc-89 http://www.wormbase.org/db/get?name=unc-89;class=Genelive Title: 'Gene Summary for unc-89' 5
Gene/Protein ztf-11 http://www.wormbase.org/db/get?name=ztf-11;class=Genelive Title: 'Gene Summary for ztf-11' 1
Person Aidan http://www.wormbase.org/db/misc/person?name=Aidan%20Dineen,;paper=WBPaper00040002silent '' 1
Person Bastiani, http://www.wormbase.org/db/misc/person?name=Michael%20Bastiani,;paper=WBPaper00040002live Title: 'Person Report: Michael Bastiani' 1
Person Dineen, http://www.wormbase.org/db/misc/person?name=Aidan%20Dineen,;paper=WBPaper00040002silent '' 1
Person Gaudet http://www.wormbase.org/db/misc/person?name=Jeb%20Gaudet;paper=WBPaper00040002live Title: 'Person Report: Jeb Gaudet' 1
Person Ghai, http://www.wormbase.org/db/misc/person?name=Vikas%20Ghai,;paper=WBPaper00040002live Title: 'Person Report: Vik' 1
Person Jeb http://www.wormbase.org/db/misc/person?name=Jeb%20Gaudet;paper=WBPaper00040002live Title: 'Person Report: Jeb Gaudet' 1
Person Michael http://www.wormbase.org/db/misc/person?name=Michael%20Bastiani,;paper=WBPaper00040002live Title: 'Person Report: Michael Bastiani' 1
Person Raharjo, http://www.wormbase.org/db/misc/person?name=Wahyu%20Hendrati%20Raharjo,;paper=WBPaper00040002silent '' 1
Person Vikas http://www.wormbase.org/db/misc/person?name=Vikas%20Ghai,;paper=WBPaper00040002live Title: 'Person Report: Vik' 1
Person Wahyu Hendrati http://www.wormbase.org/db/misc/person?name=Wahyu%20Hendrati%20Raharjo,;paper=WBPaper00040002silent '' 1
Phenotype Dpy http://www.wormbase.org/db/get?name=WBPhenotype:0000583;class=Phenotypelive Title: 'Phenotype Search: WBPhenotype:0000583'
Primary name: 'dumpy'
2
Phenotype Pat http://www.wormbase.org/db/get?name=WBPhenotype:0000053;class=Phenotypelive Title: 'Phenotype Search: WBPhenotype:0000053'
Primary name: 'paralyzed arrested elongation two fold'
1
Phenotype Pun http://www.wormbase.org/db/get?name=WBPhenotype:0001748;class=Phenotypelive Title: 'Phenotype Search: WBPhenotype:0001748'
Primary name: 'pharynx unattached'
1
Phenotype Sma http://www.wormbase.org/db/get?name=WBPhenotype:0000229;class=Phenotypelive Title: 'Phenotype Search: WBPhenotype:0000229'
Primary name: 'small'
3
Rearrangement hT2[bli-4(e937) let-?(q782) qIs48] http://www.wormbase.org/db/get?name=hT2[bli-4(e937)%20let-?(q782)%20qIs48];class=Rearrangementlive Title: 'Rearrangement Report for 1' 1
Strain CB4856 http://www.wormbase.org/db/get?name=CB4856;class=Strainlive Title: 'Strain report for ' 1
Strain HB101 http://www.wormbase.org/db/get?name=HB101;class=Strainlive Title: 'Strain report for ' 1
Strain N2 http://www.wormbase.org/db/get?name=N2;class=Strainlive Title: 'Strain report for ' 1
Transgene ivIs12 http://www.wormbase.org/db/get?name=ivIs12;class=Transgenelive Title: 'Transgene Summary:ivIs12' 4
Transgene jcIs1 http://www.wormbase.org/db/get?name=jcIs1;class=Transgenelive Title: 'Transgene Summary:jcIs1' 1
Variation e120 http://www.wormbase.org/db/get?name=e120;class=Variationlive Title: 'Variation report for: e120'
Corresponding gene: 'unc-4'
1
Variation e1460 http://www.wormbase.org/db/get?name=e1460;class=Variationlive Title: 'Variation report for: e1460'
Corresponding gene: 'unc-89'
3
Variation e184 http://www.wormbase.org/db/get?name=e184;class=Variationlive Title: 'Variation report for: e184'
Corresponding gene: 'dpy-13'
1
Variation e187 http://www.wormbase.org/db/get?name=e187;class=Variationlive Title: 'Variation report for: e187'
Corresponding gene: 'rol-6'
1
Variation e30 http://www.wormbase.org/db/get?name=e30;class=Variationlive Title: 'Variation report for: e30'
Corresponding gene: 'sma-1'
3
Variation e491 http://www.wormbase.org/db/get?name=e491;class=Variationlive Title: 'Variation report for: e491'
Corresponding gene: 'sma-3'
1
Variation e502 http://www.wormbase.org/db/get?name=e502;class=Variationlive Title: 'Variation report for: e502'
Corresponding gene: 'sma-2'
1
Variation e61 http://www.wormbase.org/db/get?name=e61;class=Variationlive Title: 'Variation report for: e61'
Corresponding gene: 'dpy-5'
1
Variation gk302 http://www.wormbase.org/db/get?name=gk302;class=Variationlive Title: 'Variation report for: gk302'
Corresponding gene: 'let-381'
1
Variation iv36 http://www.wormbase.org/db/get?name=iv36;class=Variationsilent '' 3
Variation iv37 http://www.wormbase.org/db/get?name=iv37;class=Variationsilent '' 6
Variation iv38 http://www.wormbase.org/db/get?name=iv38;class=Variationsilent '' 17
Variation iv50 http://www.wormbase.org/db/get?name=iv50;class=Variationsilent '' 5
Variation iv52 http://www.wormbase.org/db/get?name=iv52;class=Variationsilent '' 8
Variation sb118 http://www.wormbase.org/db/get?name=sb118;class=Variationlive Title: 'Variation report for: sb118'
Corresponding gene: 'let-502'
2
Variation su1006 http://www.wormbase.org/db/get?name=su1006;class=Variationlive Title: 'Variation report for: su1006'
Corresponding gene: 'rol-6'
2
Variation sy101 http://www.wormbase.org/db/get?name=sy101;class=Variationlive Title: 'Variation report for: sy101'
Corresponding gene: 'let-60'
1
Variation sy127 http://www.wormbase.org/db/get?name=sy127;class=Variationlive Title: 'Variation report for: sy127'
Corresponding gene: 'let-60'
1
Variation tm299 http://www.wormbase.org/db/get?name=tm299;class=Variationlive Title: 'Variation report for: tm299'
Corresponding gene: 'hlh-6'
4
TOTAL 352